MBGD: MBGD Archive

MBGD Archive

Instructions
Each file contains an ortholog table and is named as "mbgd_ReleaseNo_TableType.TableFormat", where ReleaseNo is in the form of Year-SerialNo, such as "mbgd_2008-01.default.tab".
Right-click on the link and choose "Download linked file as" (or equivalent) to download and save the file.

Table types

default
A cluster table generated by the DomClust program using the default set of organisms.

extended
A cluster table extended from the default table that covers all organisms stored in the database. Each cluster ID is same as that of the default table.
Table formats

tab format
A tab-delimited text file suitale for viewing in Excel or other spreadsheet program, where each row represents an orthologous group and each column represents an organism.

dclst format
A text file suitable for viewing in the RECOG program. (You may need the 64 bit version of RECOG to read the latest "extended" table)

xml format
The OrthoXML format defined as a standardized data exchange format for orthology data. We also provide all the sequence information in the accompanying SeqXML format.
Alignments and phylogenetic trees

clustalo
Archived multiple sequence alignments calculated for each orthologous group by the Clustal Omega program.
fasttree
Archived phylogenetc trees calculated for each orthologous group by the FastTree program.

mbgd_2024-01 2024/10/4	mbgd_2024-01_default.dclst.gz (120.2 MB)
	mbgd_2024-01_default.tab.gz (56.4 MB)
	mbgd_2024-01_extended.dclst.gz (118.4 MB)
	mbgd_2024-01_extended.tab.gz (100.3 MB)
	gene (4361.2 MB) , dnaseq (44195.2 MB) , geneseq (37421.5 MB) , proteinseq (24309.6 MB)
mbgd_2022-01 2022/03/30	mbgd_2022-01_default.dclst.gz (77.0 MB)
	mbgd_2022-01_default.tab.gz (38.3 MB)
	mbgd_2022-01_extended.dclst.gz (204.0 MB)
	mbgd_2022-01_extended.tab.gz (181.2 MB)
	gene (1860.4 MB) , dnaseq (19910.0 MB) , geneseq (16423.6 MB) , proteinseq (10335.1 MB)
mbgd_2018-01 2018/11/06	mbgd_2018-01.seqxml.xml.gz (3146.0 MB)
	mbgd_2018-01_default.dclst.gz (49.0 MB)
	mbgd_2018-01_default.tab.gz (26.4 MB)
	mbgd_2018-01_default.xml.gz (32.5 MB)
	mbgd_2018-01_extended.dclst.gz (251.0 MB)
	mbgd_2018-01_extended.tab.gz (230.2 MB)
	mbgd_2018-01_extended.xml.gz (240.7 MB)
	gene (800.7 MB) , dnaseq (8269.8 MB) , geneseq (6499.0 MB) , proteinseq (4201.8 MB)
mbgd_2016-01 2016/05/19	mbgd_2016-01.seqxml.xml.gz (2191.5 MB)
	mbgd_2016-01_default.dclst.gz (41.2 MB)
	mbgd_2016-01_default.tab.gz (33.8 MB)
	mbgd_2016-01_default.xml.gz (35.2 MB)
	mbgd_2016-01_extended.dclst.gz (204.0 MB)
	mbgd_2016-01_extended.tab.gz (180.5 MB)
	mbgd_2016-01_extended.xml.gz (188.1 MB)
	gene (586.1 MB) , dnaseq (5765.0 MB) , geneseq (4767.2 MB) , proteinseq (3075.0 MB)
mbgd_2015-01 2015/04/24	mbgd_2015-01.seqxml.xml.gz (1741.3 MB)
	mbgd_2015-01_default.dclst.gz (29.9 MB)
	mbgd_2015-01_default.tab.gz (25.7 MB)
	mbgd_2015-01_default.xml.gz (28.6 MB)
	mbgd_2015-01_extended.dclst.gz (137.1 MB)
	mbgd_2015-01_extended.tab.gz (118.6 MB)
	mbgd_2015-01_extended.xml.gz (128.6 MB)
	gene (414.1 MB) , dnaseq (3994.9 MB) , geneseq (3319.1 MB) , proteinseq (2145.3 MB)
mbgd_2014-02 2014/09/24	mbgd_2014-02.seqxml.xml.gz (1684.4 MB)
	mbgd_2014-02_default.dclst.gz (26.1 MB)
	mbgd_2014-02_default.tab.gz (21.7 MB)
	mbgd_2014-02_default.xml.gz (26.5 MB)
	mbgd_2014-02_extended.dclst.gz (109.5 MB)
	mbgd_2014-02_extended.tab.gz (92.3 MB)
	mbgd_2014-02_extended.xml.gz (101.2 MB)
	default.clustalo (524.9 MB) , default.fasttree (45.6 MB)
	gene (340.9 MB) , dnaseq (3288.0 MB) , geneseq (2631.8 MB) , proteinseq (1699.5 MB)
mbgd_2014-01 2014/03/05	mbgd_2014-01.seqxml.xml.gz (1583.2 MB)
	mbgd_2014-01_default.dclst.gz (35.9 MB)
	mbgd_2014-01_default.tab.gz (29.1 MB)
	mbgd_2014-01_default.xml.gz (30.1 MB)
	mbgd_2014-01_extended.dclst.gz (118.2 MB)
	mbgd_2014-01_extended.tab.gz (100.2 MB)
	mbgd_2014-01_extended.xml.gz (104.3 MB)
	mbgd_2014-01_xref_uniprot.txt.gz (40.9 MB)
	gene (330.9 MB) , dnaseq (3048.2 MB) , geneseq (2560.3 MB) , proteinseq (1656.6 MB)
mbgd_2013-02 2013/09/28	mbgd_2013-02.seqxml.xml.gz (1450.1 MB)
	mbgd_2013-02_default.dclst.gz (35.5 MB)
	mbgd_2013-02_default.tab.gz (28.7 MB)
	mbgd_2013-02_default.xml.gz (29.7 MB)
	mbgd_2013-02_extended.dclst.gz (111.4 MB)
	mbgd_2013-02_extended.tab.gz (93.6 MB)
	mbgd_2013-02_extended.xml.gz (97.6 MB)
	gene (307.5 MB) , dnaseq (2837.5 MB) , geneseq (2376.9 MB) , proteinseq (1539.0 MB)
mbgd_2013-01 2013/03/28	mbgd_2013-01.seqxml.xml.gz (1259.5 MB)
	mbgd_2013-01_default.dclst.gz (33.3 MB)
	mbgd_2013-01_default.tab.gz (27.0 MB)
	mbgd_2013-01_default.xml.gz (28.3 MB)
	mbgd_2013-01_extended.dclst.gz (101.7 MB)
	mbgd_2013-01_extended.tab.gz (84.8 MB)
	mbgd_2013-01_extended.xml.gz (90.0 MB)
	gene (284.6 MB) , dnaseq (2627.0 MB) , geneseq (2203.6 MB) , proteinseq (1426.4 MB)
mbgd_2012-02 2012/12/07	mbgd_2012-02.seqxml.xml.gz (1010.0 MB)
	mbgd_2012-02_default.dclst.gz (28.0 MB)
	mbgd_2012-02_default.tab.gz (22.3 MB)
	mbgd_2012-02_default.xml.gz (25.0 MB)
	mbgd_2012-02_extended.dclst.gz (87.6 MB)
	mbgd_2012-02_extended.tab.gz (72.8 MB)
	mbgd_2012-02_extended.xml.gz (78.2 MB)
	gene (248.2 MB) , dnaseq (2285.5 MB) , geneseq (1921.5 MB) , proteinseq (1243.5 MB)
mbgd_2012-01 2012/03/26	mbgd_2012-01.seqxml.xml.gz (849.5 MB)
	mbgd_2012-01_default.dclst.gz (25.2 MB)
	mbgd_2012-01_default.tab.gz (20.3 MB)
	mbgd_2012-01_default.xml.gz (22.2 MB)
	mbgd_2012-01_extended.dclst.gz (48.0 MB)
	mbgd_2012-01_extended.tab.gz (41.0 MB)
	mbgd_2012-01_extended.xml.gz (49.7 MB)
	gene (186.3 MB) , dnaseq (1813.7 MB) , geneseq (1500.0 MB) , proteinseq (972.2 MB)
mbgd_2011-02 2012/01/31	mbgd_2011-02.seqxml.xml.gz (845.6 MB)
	mbgd_2011-02_default.dclst.gz (21.9 MB)
	mbgd_2011-02_default.tab.gz (17.5 MB)
	mbgd_2011-02_default.xml.gz (19.4 MB)
	mbgd_2011-02_extended.dclst.gz (40.0 MB)
	mbgd_2011-02_extended.tab.gz (34.1 MB)
	mbgd_2011-02_extended.xml.gz (42.2 MB)
	gene (160.4 MB) , dnaseq (1539.2 MB) , geneseq (1274.3 MB) , proteinseq (825.6 MB)
mbgd_2011-01 2011/03/30	mbgd_2011-01_default.dclst.gz (21.2 MB)
	mbgd_2011-01_default.tab.gz (17.0 MB)
	mbgd_2011-01_extended.dclst.gz (38.7 MB)
	mbgd_2011-01_extended.tab.gz (33.4 MB)
	gene (156.6 MB) , dnaseq (1496.0 MB) , geneseq (1235.7 MB) , proteinseq (801.6 MB)
mbgd_2010-02 2010/11/03	mbgd_2010-02_default.dclst.gz (19.6 MB)
	mbgd_2010-02_default.tab.gz (14.8 MB)
	mbgd_2010-02_extended.dclst.gz (35.5 MB)
	mbgd_2010-02_extended.tab.gz (29.0 MB)
	gene (144.0 MB) , dnaseq (1382.9 MB) , geneseq (1135.2 MB) , proteinseq (736.2 MB)
mbgd_2010-01 2010/04/01	mbgd_2010-01_default.dclst.gz (15.9 MB)
	mbgd_2010-01_default.tab.gz (13.0 MB)
	mbgd_2010-01_extended.dclst.gz (30.0 MB)
	mbgd_2010-01_extended.tab.gz (25.8 MB)
	gene (128.3 MB) , dnaseq (1522.5 MB) , geneseq (1008.9 MB) , proteinseq (654.4 MB)
mbgd_2009-02 2009/08/30	mbgd_2009-02_default.dclst.gz (15.3 MB)
	mbgd_2009-02_default.tab.gz (13.5 MB)
	mbgd_2009-02_extended.dclst.gz (28.4 MB)
	mbgd_2009-02_extended.tab.gz (26.5 MB)
	gene (115.6 MB) , dnaseq (1160.3 MB) , geneseq (906.4 MB) , proteinseq (587.8 MB)
mbgd_2009-01 2009/04/21	mbgd_2009-01_default.dclst.gz (10.0 MB)
	mbgd_2009-01_default.tab.gz (7.7 MB)
	mbgd_2009-01_extended.dclst.gz (20.6 MB)
	mbgd_2009-01_extended.tab.gz (17.1 MB)
	gene (96.8 MB) , dnaseq (926.3 MB) , geneseq (770.6 MB) , proteinseq (500.3 MB)
mbgd_2008-02 2008/12/24	mbgd_2008-02_default.dclst.gz (9.3 MB)
	mbgd_2008-02_default.tab.gz (7.1 MB)
	mbgd_2008-02_extended.dclst.gz (18.0 MB)
	mbgd_2008-02_extended.tab.gz (14.8 MB)
	gene (83.3 MB) , dnaseq (800.4 MB) , geneseq (661.8 MB) , proteinseq (429.5 MB)
mbgd_2008-01 2008/04/01	mbgd_2008-01_default.dclst.gz (7.1 MB)
	mbgd_2008-01_default.tab.gz (5.5 MB)
	mbgd_2008-01_extended.dclst.gz (14.0 MB)
	mbgd_2008-01_extended.tab.gz (11.3 MB)
	gene (67.8 MB) , dnaseq (621.2 MB) , geneseq (538.0 MB) , proteinseq (349.4 MB)

Microbial Genome Database for Comparative Analysis
Questions and comments to: uchiyama@nibb.ac.jp