CGAT User Manual
Ikuo Uchiyama
National Institute for Basic Biology, National Institutes of Natural Sciences
Copyright © 2006 by Ikuo Uchiyama
Table of Contents
What is CGAT ?
Installing CGAT
Requirements
Download
Install
AlignmentViewer
DataServer
The CGAT AlignmentViewer program
Starting AlignmentViewer
Load data
The main window of AlignmentViewer
Control panel
Alignment display panel
Dotplot display panel
Menu items
File menu
Search menu
View menu
Configuring AlignmentViewer
The CGAT DataServer package
Overview of CGAT DataServer
Directory structure
Database construction
Overview of the data construction procedure
Preparing genomic sequences
Configuring database building procedure
Start building
Release data
Web server set up
Next >>>
What is CGAT ?