SPARQL Query
MBGD RDF Model (Click to Magnify)
Reference
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Chiba, H., Nishide, H., Uchiyama, I. Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data. PLoS ONE, 10(4): e0122802 (2015). [link]
Supporting Information
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orthoxml_example.ttl: RDF representation of OrthoXML example.
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example1.rq: SPARQL query shown in Figure 3B.
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example2.rq: SPARQL query shown in Figure 4B.
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example2a.rq: More complicated SPARQL query to compare ortholog groups from different databases.
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example3-1.rq: SPARQL query shown in Figure 5B.
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example3-2.rq: SPARQL query shown in Figure 5C.
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example3-2a.rq: Almost same as example3-2.rq, but the cluster ID "12897" is replaced by the placeholder "$ARG."
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example3.R: R source code for execution of SPARQL queries example3-1.rq and example3-2a.rq.