MBGD

Microbial Genome Database for Comparative Analysis

National Institute for Basic Biology, National Institutes of Natural Sciences

Introduction
Overview and quick tours

Ortholog Classification

View Ortholog Table
Overview of the current ortholog table

Organism Selection
Choose organisms and create a new ortholog table

Enter My MBGD Mode
Add your own genome sequences to MBGD.

List of Cluster Tables
Cluster tables that you have made

Searching MBGD

Keyword Search

Mode:
Advanced Search

Homology Search

List of Function Categories

List of Gene Names

Analysis

Pairwise comparisons
Compare closely related genomes using the CGAT interface

Download Data and Related Programs

Data Archive
Download data from the MBGD server

DomClust
The clustering program used for ortholog grouping in MBGD

CGAT
A comparative genome analysis tool for closely related genome comparison

CoreAligner
A multiple genome alignment tool for core genome identification

MBGD is a database for comparative analysis of completely sequenced microbial genomes, the number of which is now growing rapidly. The aim of MBGD is to facilitate comparative genomics from various points of view such as ortholog identification, paralog clustering, motif analysis and gene order comparison.

References: Nucleic Acids Res. 31:58-62 (2003) / Nucleic Acids Res. 35:D343-D346 (2007)/ Nucleic Acids Res. 38:D361-D365 (2010)

Complete genome sequences    [Data Sources]

Currently selected organisms (341) are highlighted in red. Please press "Reload" button when you return here by "Back" button

Bacteria (824)

Actinobacteria(22 / 64)
 Aquificae(4 / 5)
 Bacteroidetes(10 / 15)
 Chlorobi(5 / 11)
 Chlamydiae(3 / 13)
 Verrucomicrobia(3 / 3)
 Chloroflexi(5 / 10)
 Cyanobacteria(11 / 36)
 Deinococcus-Thermus(2 / 5)
 Dictyoglomi(1 / 2)
 Elusimicrobia(2 / 2)
 Acidobacteria(3 / 3)
 Firmicutes(35 / 165)
 		Fusobacteria(1 / 1)
 Gemmatimonadetes(1 / 1)
 Nitrospirae(1 / 1)
 Planctomycetes(1 / 1)
 Proteobacteria(156 / 436)
 		Spirochaetes(4 / 18)
 Tenericutes(5 / 23)
 Thermotogae(4 / 9)

Archaea (61)

Crenarchaeota(11 / 21)
 Euryarchaeota(25 / 37)
 		Korarchaeota(1 / 1)
 Nanoarchaeota(1 / 1)
 Thaumarchaeota(1 / 1)

Eukaryota (23)

Apicomplexa(3 / 3)
 Ascomycota(11 / 11)
 Basidiomycota(1 / 1)
 Microsporidia(1 / 1)
 Chordata(1 / 1)
 Arthropoda(1 / 1)
 Nematoda(1 / 1)
 Streptophyta(1 / 1)
This database is supported by Grant-in-Aid for Publication of Scientific Research Results from Japan Society for the Promotion of Science (JSPS) and by Institute for Bioinformatics Research Development, Japan Science Technology Agency (BIRD-JST).
Please send questions and comments to: Ikuo Uchiyama ( uchiyama@nibb.ac.jp )